atac-seq library data preprocessing Search Results


data atac seq  (New England Biolabs)
99
New England Biolabs data atac seq
Data Atac Seq, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/NEBNext+Ultra+II+DNA+Library+Prep+Kit+for+Illumina/pm37515769-230-158-153
Average 99 stars, based on 1 article reviews
data atac seq - by Bioz Stars, 2026-10
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cell ranger atac pipeline  (10X Genomics)
86
10X Genomics cell ranger atac pipeline
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Cell Ranger Atac Pipeline, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/cellranger/pmc09246173-143-12-10
Average 86 stars, based on 1 article reviews
cell ranger atac pipeline - by Bioz Stars, 2026-10
86/100 stars
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1511 truseq rna sample preparation v2 kit illumina rs 122 2001 deposited data raw human cll atac seq  (Illumina Inc)
99
Illumina Inc 1511 truseq rna sample preparation v2 kit illumina rs 122 2001 deposited data raw human cll atac seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
1511 Truseq Rna Sample Preparation V2 Kit Illumina Rs 122 2001 Deposited Data Raw Human Cll Atac Seq, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/TruSeq+RNA+Library+Preparation+Kit+v2/pm31801079-221-0-7
Average 99 stars, based on 1 article reviews
1511 truseq rna sample preparation v2 kit illumina rs 122 2001 deposited data raw human cll atac seq - by Bioz Stars, 2026-10
99/100 stars
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atac-seq  (Nextera AS)
90
Nextera AS atac-seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Nextera AS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq+libraries/10__21203_slash_rs__3__rs___1650982_slash_v1-218-0-15
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-10
90/100 stars
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atac seq  (Novogene)
86
Novogene atac seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Novogene, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/pm40948388-520-0-13
Average 86 stars, based on 1 article reviews
atac seq - by Bioz Stars, 2026-10
86/100 stars
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atac-seq sample prep  (DIAGENODE DIAGNOSTICS)
90
DIAGENODE DIAGNOSTICS atac-seq sample prep
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq Sample Prep, supplied by DIAGENODE DIAGNOSTICS, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq+kit/ppr0231426-142-0-11
Average 90 stars, based on 1 article reviews
atac-seq sample prep - by Bioz Stars, 2026-10
90/100 stars
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atac seq  (Azenta)
86
Azenta atac seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Azenta, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/bio_rxiv__2025__11__14__688441-312-0-6
Average 86 stars, based on 1 article reviews
atac seq - by Bioz Stars, 2026-10
86/100 stars
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atac-seq  (BGI Shenzhen)
90
BGI Shenzhen atac-seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by BGI Shenzhen, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/pmc11495842-385-1-8
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-10
90/100 stars
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atac-seq  (Johns Hopkins HealthCare)
90
Johns Hopkins HealthCare atac-seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Johns Hopkins HealthCare, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/10__1172_slash_jci163145-365-13-3
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-10
90/100 stars
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atac seq  (Chrom Tech)
86
Chrom Tech atac seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Chrom Tech, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/pmc12715305-32-22-2
Average 86 stars, based on 1 article reviews
atac seq - by Bioz Stars, 2026-10
86/100 stars
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atac-seq  (Omigen Inc)
90
Omigen Inc atac-seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by Omigen Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/pmc07377900-182-0-4
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-10
90/100 stars
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atac-seq  (DNAFORM Inc)
90
DNAFORM Inc atac-seq
Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in <t>human</t> <t>coronary</t> artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk <t>ATAC-seq</t> library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.
Atac Seq, supplied by DNAFORM Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/atac-seq+library+data+preprocessing/atac+seq/pm40181449-73-10-14
Average 90 stars, based on 1 article reviews
atac-seq - by Bioz Stars, 2026-10
90/100 stars
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Image Search Results


Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in human coronary artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk ATAC-seq library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.

Journal: PLoS Genetics

Article Title: The HDAC9 -associated risk locus promotes coronary artery disease by governing TWIST1

doi: 10.1371/journal.pgen.1010261

Figure Lengend Snippet: Genome browser showing single-cell chromatin accessibility (scATAC-seq) profiles in human coronary artery cell types shown (A) across the wider HDAC9 -associated CAD risk locus (hg38) and (B) a zoomed in view of the lead SNP rs2107595 highlighting open chromatin peaks and peak2gene links overlapping rs2107595 and top LD SNPs. Fine-mapped CAD GWAS SNPs from CAUSALdb are shown in blue. Peaks represent normalized accessibility as calculated in ArchR, with all tracks visualized in the UCSC browser at equivalent window sizes. The ‘Coronary’ track (uppermost track in A) represents a bulk ATAC-seq library from 50,000 nuclei (therefore consisting of several cell types) generated from human coronary artery . Loops denote peak2gene based correlation between accessibility at gene regulatory elements (410 bp) and gene expression using the integrated human coronary artery scATAC-seq/scRNA-seq data for genes at the HDAC9 -associated CAD risk locus.

Article Snippet: Coronary artery single cell ATAC-seq data was preprocessed using the 10x Genomics Cell Ranger ATAC pipeline (version 1.2.0) and reads mapped to the hg38 reference genome.

Techniques: Generated, Gene Expression